snpReady - Preparing Genotypic Datasets in Order to Run Genomic Analysis
Three functions to clean, summarize and prepare genomic datasets to Genome Selection and Genome Association analysis and to estimate population genetic parameters.
Last updated 5 years ago
5.90 score 4 stars 33 scripts 276 downloadsBGGE - Bayesian Genomic Linear Models Applied to GE Genome Selection
Application of genome prediction for a continuous variable, focused on genotype by environment (GE) genomic selection models (GS). It consists a group of functions that help to create regression kernels for some GE genomic models proposed by Jarquín et al. (2014) <doi:10.1007/s00122-013-2243-1> and Lopez-Cruz et al. (2015) <doi:10.1534/g3.114.016097>. Also, it computes genomic predictions based on Bayesian approaches. The prediction function uses an orthogonal transformation of the data and specific priors present by Cuevas et al. (2014) <doi:10.1534/g3.114.013094>.
Last updated 6 years ago
bayesian-inferencege-genomic-modelsgenomicgenotype-by-environmentpredictionstatistics
3.60 score 1 stars 5 scripts 291 downloads