Package: BGGE 0.6.6
BGGE: Bayesian Genomic Linear Models Applied to GE Genome Selection
Application of genome prediction for a continuous variable, focused on genotype by environment (GE) genomic selection models (GS). It consists a group of functions that help to create regression kernels for some GE genomic models proposed by Jarquín et al. (2014) <doi:10.1007/s00122-013-2243-1> and Lopez-Cruz et al. (2015) <doi:10.1534/g3.114.016097>. Also, it computes genomic predictions based on Bayesian approaches. The prediction function uses an orthogonal transformation of the data and specific priors present by Cuevas et al. (2014) <doi:10.1534/g3.114.013094>.
Authors:
BGGE_0.6.6.tar.gz
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BGGE.pdf |BGGE.html✨
BGGE/json (API)
NEWS
| # Install 'BGGE' in R: |
| install.packages('BGGE', repos = c('https://italo-granato.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/italo-granato/bgge/issues
bayesian-inferencege-genomic-modelsgenomicgenotype-by-environmentpredictionstatistics
Last updated 6 years agofrom:93851736e2. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-win | WARNING | Nov 01 2024 |
| R-4.5-linux | WARNING | Nov 01 2024 |
| R-4.4-win | WARNING | Nov 01 2024 |
| R-4.4-mac | WARNING | Nov 01 2024 |
| R-4.3-win | WARNING | Nov 01 2024 |
| R-4.3-mac | WARNING | Nov 01 2024 |
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genotype x Environment models using regression kernel | BGGE |
| Kernel matrix for GE genomic selection models | getK |
| Comparative plot | plot.BGGE |
| Print BGGE information object | print.BGGE |
