Package: BGGE 0.6.6
BGGE: Bayesian Genomic Linear Models Applied to GE Genome Selection
Application of genome prediction for a continuous variable, focused on genotype by environment (GE) genomic selection models (GS). It consists a group of functions that help to create regression kernels for some GE genomic models proposed by Jarquín et al. (2014) <doi:10.1007/s00122-013-2243-1> and Lopez-Cruz et al. (2015) <doi:10.1534/g3.114.016097>. Also, it computes genomic predictions based on Bayesian approaches. The prediction function uses an orthogonal transformation of the data and specific priors present by Cuevas et al. (2014) <doi:10.1534/g3.114.013094>.
Authors:
BGGE_0.6.6.tar.gz
BGGE_0.6.6.zip(r-4.7-any)BGGE_0.6.6.zip(r-4.6-any)BGGE_0.6.6.zip(r-4.5-any)
BGGE_0.6.6.tgz(r-4.6-any)BGGE_0.6.6.tgz(r-4.5-any)
BGGE_0.6.6.tar.gz(r-4.7-any)BGGE_0.6.6.tar.gz(r-4.6-any)
BGGE_0.6.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BGGE/json (API)
| # Install 'BGGE' in R: |
| install.packages('BGGE', repos = c('https://italo-granato.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/italo-granato/bgge/issues
bayesian-inferencege-genomic-modelsgenomicgenotype-by-environmentpredictionstatistics
Last updated from:93851736e2. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 111 | ||
| source / vignettes | OK | 148 | ||
| linux-release | WARNING | 113 | ||
| macos-release | WARNING | 210 | ||
| macos-oldrel | WARNING | 215 | ||
| windows-devel | WARNING | 80 | ||
| windows-release | WARNING | 70 | ||
| windows-oldrel | WARNING | 102 | ||
| wasm-release | OK | 71 |
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Genotype x Environment models using regression kernel | BGGE |
| Kernel matrix for GE genomic selection models | getK |
| Comparative plot | plot.BGGE |
| Print BGGE information object | print.BGGE |